Cyclophosphamide

Updated March 2026

What is Cyclophosphamide?

Download button - information sheetCyclophosphamide (brand name: Cyclonex® Endoxan®) is a medicine used to treat some inflammatory illnesses, particularly if they are complicated or affecting important organs in your body, such as complicated systemic lupus erythematosus (SLE/lupus), scleroderma and vasculitis (inflamed blood vessels) like granulomatosis with polyangiitis (GPA). Rarely, it might be used to treat rheumatoid arthritis or muscle inflammation if it affects important organs aside from the joints.

Cyclophosphamide is also used to treat some cancers.

Cyclophosphamide works by reducing the activity of the immune system which is usually the cause of inflammation in major organs and blood vessels.

Important things to remember

  • While taking cyclophosphamide you should see your rheumatologist or other specialist regularly to make sure the treatment is working and to check for any possible side effects.
  • You should have regular blood and urine tests as directed by your rheumatologist.
  • If you are concerned about any side effects, you should contact your rheumatologist as soon as possible.

What benefit can you expect from your treatment?

Cyclophosphamide can take a few weeks to work and start to make you feel better. This means other medicines such as Prednisolone/ ‘steroids’ are often used in combination with cyclophosphamide while waiting for it to work. It usually take a few months for the full effect to be seen.  

If you stop cyclophosphamide treatment for more than a few weeks there is a risk that your condition may worsen. Continue with your treatment unless advised by your doctor or unless side effects develop.

How is cyclophosphamide taken?

Cyclophosphamide can be taken by mouth as tablets or it can be given into a vein as an infusion, or ‘drip’. There is only one strength of the tablet (50mg) available in Australia.

What is the dosage and when should it be taken?

The dose depends on the illness being treated and on the person’s weight.  

The dose for the ‘drip’ or infusion way of having the medicine will be decided by your rheumatologist and is usually given 2, 3 or 4 weeks apart for anywhere between 3 and 6 months. It is usually given in a hospital day procedure area.

The tablet form of the dose is usually 75mg to 200mg per day. If you need to take a dose requiring half a tablet (e.g. 75mg), it is important not to break the tablets. Instead, you could take it 1 tablet on one day and 2 tablets the next day and continue to alternate.  

Cyclophosphamide can inflame the lining of the bladder so it is important to drink plenty of fluid to ‘flush out the bladder’ and also to regularly empty your bladder while on the tablets. Your rheumatologist will help inform you exactly how much water you should drink  .  

The tablets should be taken in the morning and should not be taken before going to bed. 
Tablets should be taken whole - do not break, crush or chew the tablets. 

Can other medicines be taken with cyclophosphamide?

Cyclophosphamide may be used with other arthritis medicines, including:

  • steroid medicines such as prednisolone or cortisone injections into the joint
  • simple pain medicines such as paracetamol.

There are separate information sheets for the medicines mentioned above.

Are there any side effects?

You might have side effects with your treatment. Tell your doctor if you are concerned about possible side effects. Sometimes this can be helped by changing the dose but your doctor can tell you if this is needed. 

Most common possible side effects

  • Many people have nausea (feeling sick) and vomiting. These effects may be worse with the tablets compared with the injection. Antinausea tablets can be used if needed.
  • Hair thinning can occur. This is not permanent and hair will grow back when the medicine is stopped.
  • Other common side effects include mouth ulcers and skin rash.

Less common and rare possible side effects

  • Blood counts: Cyclophosphamide rarely causes a drop in the number of white blood cells, which are needed to fight infection. It can also cause a drop in the number of platelets, which help stop bleeding. Regular blood tests aim to pick these problems up early when they occur. However, if you develop a sore mouth, mouth ulcers, easy bruising, nosebleeds, bleeding gums, breathlessness, infection or fever; tell your doctor straight away. 
  • Infections: There is an increased risk of developing infections, especially Herpes zoster (chicken pox and shingles). You should try to avoid contact with people who have these infections. If you have an infection or persistent fever, tell your doctor straight away. Your doctor may also give you an antibiotic to take on 3 days per week to help prevent rare but serious infections. 
  • Bladder inflammation: This medication can inflame the lining of the bladder. If you notice blood in your urine (pinkish coloured urine), tell your doctor straight away.
  • Cancers: There is an increased risk of bladder cancer with cyclophosphamide even many years later. You will be asked to have regular urine tests even after your treatment is stopped. There may also be an increased risk of other cancers such as skin (see Precautions) and lymph gland tumours.
  • Fertility: Cyclophosphamide can reduce fertility in both men and women. This occurs more often in people of later childbearing age or those taking high doses for long periods of time. Your doctor will discuss this with you before you start taking cyclophosphamide. Precautions such as storage of sperm or eggs may be considered.

What precautions are necessary?

Urine tests

  • Regular urine tests are required to monitor the effect on the bladder, even after cyclophosphamide is ceased. 

Blood tests

  • Since your white blood cells and platelets may be affected by cyclophosphamide, you must have regular blood tests during your treatment. This is very important, as these problems can be serious but may not make you feel sick.
  • As well as monitoring for side effects, blood tests help to monitor your condition to determine if the treatment is effective.
  • You will need to have full blood tests every 2 to 4 weeks for the first few months of treatment and then every 1 to 3 months after that.
  • Your GP will be informed about the schedule for your blood tests. It is important to see your general practitioner if you have been asked to do so as they have an important role to play in monitoring your condition.

Use with other medicines

  • Cyclophosphamide can interact with other medicines. You should tell all of your doctors about all medicines you are taking or plan to take. This includes over the counter or herbal/naturopathic medicines. You should also mention your treatment when you see other health professionals.
  • Cyclophosphamide should be used carefully if taken at the same time as:
    • anti-epileptic medicines such as carbamazepine and phenytoin
    • heart and blood pressure medicines such as verapamil and diltiazem
    • anti-fungal treatments such as ketoconazole, voriconazole and posiconazole
    • anti-HIV ( AIDS) medicines such as efavirenz, ritonavir, nevirapine, tipranavir, atazanavir and saquinavir
    • other antibiotics such as rifampacin, ciprofloxacin, clarithromycin, erythromycin and norfloxacin
    • warfarin (used to thin the blood).
  • If you are taking cyclophosphamide you should not take St John’s wort. This is found in some complementary/alternative medicines recommended for depression, which you can buy without a prescription.
  • You should avoid eating grapefruit or drinking grapefruit juice while taking this medicine as it can affect the level of cyclophosphamide in the body.
Vaccines
  • If you are taking cyclophosphamide you should not have ‘live’ vaccines such as MMR (measles, mumps and rubella), OPV (oral polio virus), BCG (Bacillus Calmette Guerin), or yellow fever.
  • Non-live vaccines including pneumococcal, herpes zoster (Shingrix brand only), COVID and the yearly seasonal flu vaccinations are safe and encouraged.
  • For more information on vaccinations is available here.

Pregnancy, breastfeeding and fertility

  • Cyclophosphamide nust not be taken during pregnancy or while breastfeeding. If you are a woman of childbearing age you should use effective contraception throughout your treatment and for 6 months after stopping the treatment.
  • Men taking cyclophosphamide should also use effective contraception.
  • If you are planning a family or if you become pregnant while taking cyclophosphamide, you should discuss this with your doctor as soon as possible.
  • Some women taking cyclophosphamide may stop having periods, but they can still become pregnant. You must use effective contraception while taking this medicine.
  • Cyclophosphamide can reduce fertility in men and women.
  • More detailed information is available here.

Skin checks

  • When taking cyclophosphamide it is important to use a sunscreen and avoid long periods out in the sun. A yearly skin check is recommended to monitor for skin cancers.

How to store cyclophosphamide

  • Store cyclophosphamide tablets at room temperature, away from heat, moisture and light (e.g. not in the bathroom).
  • Keep all medicines out of reach of children.